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Created on: 11-07-2011
Last updated on: 07-04-2012
Resources
Post-analysis categorization
Literature search
Post-survey categorization
Features validated in most cases
Gene expression
MicroRNA
Pathways
Primer designing
Protein-protein interactions (commonly used resources)
Protein structure prediction
Features not validated
Alternative splice form analysis
DNA motif detection
Multiple sequence alignment
Next generation sequencing
Simple lists
Gene ID conversion
Promoter prediction
Protein-protein interactions (all resources)
RNA structure prediction
SNP analysis
Preliminary lists
Antibodies
Biomarkers
Carbohydrates
Cell lines
Clinical trials
DNA/RNA structures
Disease-gene relationships
Enzymes
Functional analysis
Gene Ontology specific analysis
Gene/protein unified information
Genetics
Genomes and Genomics
Lipids
Microarray data analysis
Microbiology
Molecular docking
Nomenclature
Organelles
Orthologs
Pharmacokinetics and toxicology
Phylogeny/Taxonomy
Protein domains
Protein localization
Protein-nucleic acid interactions
Secretome
Small molecules
Spectral analysis
Text-mining
Transcription factors and binding sites
MicroRNA
Select a category or a combination (max. 3)
Based on an application area
Find microRNA
Find microRNA
3.5 FUNCTIONAL ANALYSIS: protein coding and non coding transcripts
3.9 FUNCTIONAL ANALYSIS: new tool development
Find microRNA:precursor
Find microRNA
3.6 FUNCTIONAL ANALYSIS: promoter region/ transcription factor
Find microRNA
Find microRNA:species wise
4. EXPERIMENTAL ANALYSIS
6.5 SPECIES: chicken
Find microRNa
Find microRNA: target
6.6 SPECIES: worm
6.7 SPECIES: fly
Find microRNA
Find microRNA:species wise
1.8 FIND microRNA: integrated tools
6.4 SPECIES: zebrafish
4.1 EXPERIMENTAL data analysis
6.8 SPECIES: virus
3.7 FUNCTIONAL ANALYSIS: based on conservation
6.9 SPECIES: plant
4.2 EXPERIMENTAL aids; predicting mRNA-microRNA interaction
6.10 SPECIES: miscellaneous
7. BROAD SCOPE RESOURCES
Find microRNA
Find microRNA: target
Find microRNA
7.1 BROAD SCOPE RESOURCES: data mining
Find microRNA:target
7.2 BROAD SCOPE RESOURCES: non coding RNA
Find microRNA:target
1.5 FIND microRNA: intronic
4.3 EXPERIMENTAL aids; RNA interference
Find microRNA:mature form
Find microRNA: target
1.4 FIND microRNA: specieswise
7.3 BROAD SCOPE RESOURCES: RNA secondary structure
4.4 EXPERIMENTAL: microRNA data with evidence
7.4 BROAD SCOPE RESOURCES: miscellanous
Find microRNA:clusterwise
1.2 FIND microRNA: pseudo and real precursor
1.1 FIND microRNA: precursor
Find microRNA
Find microRNA: target
2.6 FIND TARGET: effect of action
Find microRNA
Find microRNA: mature form
Find micro RNA
Find microRNA
3.2 FUNCTIONAL ANALYSIS: pathways
Find microRNA:target
3.3 FUNCTIONAL ANALYSIS: SNP/ genetic variations
Find microRNA: mature form
Find microRNA:mature form
Find microRNA:target
Find microRNA
Find microRNA:mature form
3.8 FUNCTIONAL ANALYSIS: microRNA secondary structure
Find microRNA
Find microRNA: mature form
Find microRNA
Find microRNA
2. FIND TARGET
3. FUNCTIONAL ANALYSIS
Find microRNA
Find microRNA:species wise
5. DISEASE/ TISSUE SPECIFIC
1.6 FIND microRNA: clusterwise
3.4 FUNCTIONAL ANALYSIS: annotation or classification
Find microRNA:pseudo and real
6. SPECIES
Find microRNA:mature form
Find microRNA
6.1 SPECIES: human
Find microRNA:mature form
Find microRNA
Find microRNA
2.4 FIND TARGET: database
Find microRNA: target
Find microRNA
Find microRNA
Find microRNa
1.3 FIND microRNA: mature form
2.5 FIND TARGET: integrated tools
Find microRNA
Find microRNA
Find microRNA: mature form
Find microRNA
Find microRNA:target
2.1 FIND TARGET: pseudo and real
6.2 SPECIES: rat
2.2 FIND TARGET: non conserved
Find microRNA
6.3 SPECIES: mouse
Find microRNA
Find microRNA
2.3 FIND TARGET: alternatively spliced transcript
Find microRNA
Find micro RNA
Find microRNA
3.1 FUNCTIONAL ANALYSIS: regulation/ expression
1. FIND microRNA
Find microRNA
Find microRNA
Find microRNA
Find microRNA
Find microRN: target
1.7 FIND microRNA: based on conservation
Find microRNA:clusterwise
Based on other parameters
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Basic concepts
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