| User Interface |
No |
No |
Yes |
No |
Yes |
| Input |
Nucleotide sequence in FASTA format |
Nucleotide sequence in FASTA format |
Nucleotide sequence in FASTA format |
Nucleotide sequence in FASTA format |
Nucleotide sequence in FASTA/Genbank format or by providing gene id, gene name. |
| Analysis possible on both the strands |
No |
Yes |
Yes |
Yes |
Yes |
| Preference to positional conservation of motif |
No |
Yes |
No |
No |
Yes |
| Positionally conserved common variants |
Yes |
Yes |
No |
No |
Yes |
| Positionally conserved co-occurring variants |
No |
No |
No |
No |
Yes |
| Table of counts of a motif with their position irrespective of threshold and cut offs |
No |
No |
No |
No |
Yes |
| Graphical representation |
No |
No |
Yes |
No |
Yes |
| Sequence logo |
No |
No |
Yes |
No |
No |
| Motif analysis with respect to a same or different reference point(s) (for e.g. TSS) |
No |
No |
No |
No |
Yes |
| Background file required |
Yes |
Yes |
Yes (Not a mandatory input) |
Yes |
No |
| Reports p-value/e-value |
Yes |
Yes |
Yes |
Yes |
Yes |
